If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ), 'gf_id' => 'HOM05D000859', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000859' ), 'data_identifier' => 'HOM05D000859', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000859', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '695', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10610' => 'bna', 'A02p00330' => 'bna', 'A02p21940' => 'bna', 'A02p29420' => 'bna', 'A03p28220' => 'bna', 'A03p51430' => 'bna', 'A06p46300' => 'bna', 'A07p10940' => 'bna', 'A07p43270' => 'bna', 'A08p13890' => 'bna', 'A08p13900' => 'bna', 'A08p25310' => 'bna', 'A09p21970' => 'bna', 'A09p37190' => 'bna', 'A10p27410' => 'bna', 'Aa31LG3G17010' => 'aar', 'Aa31LG4G8090' => 'aar', 'Aa31LG6G1340' => 'aar', 'Aa31LG6G6400' => 'aar', 'Aa31LG9G14540' => 'aar', 'Aa31LG9G7190' => 'aar', 'Actinidia07897' => 'ach', 'Actinidia12568' => 'ach', 'Actinidia18797' => 'ach', 'Actinidia29580' => 'ach', 'Actinidia33151' => 'ach', 'Actinidia35216' => 'ach', 'Ah.02g122200' => 'amhyb', 'Ah.03g142500' => 'amhyb', 'Ah.05g170310' => 'amhyb', 'Ah.14g087110' => 'amhyb', 'AL1G42850' => 'aly', 'AL2G38260' => 'aly', 'AL2G38330' => 'aly', 'AL6G20620' => 'aly', 'AL6G42460' => 'aly', 'AL7G35670' => 'aly', 'AL8G12680' => 'aly', 'Aqoxy1G02070' => 'aox', 'Aqoxy4G00369' => 'aox', 'Aqoxy5G01870' => 'aox', 'Aqoxy6G00577' => 'aox', 'Aqoxy7G03066' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5HI43U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6DJV34' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WZ7JX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DK3GT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQ9RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KI8H75' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L6WMER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE2REB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NB6XIH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QA5KMM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7QVNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VYCB27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9TCMH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WA9ZIP' => 'arhy', 'AT1G29140' => 'ath', 'AT1G78040' => 'ath', 'AT4G08685' => 'ath', 'AT4G18596' => 'ath', 'AT5G10130' => 'ath', 'AT5G45880' => 'ath', 'ATR0332G024' => 'atr', 'ATR0751G230' => 'atr', 'Atru.chr10.1670' => 'acertr', 'Atru.chr2.2166' => 'acertr', 'Atru.chr2.2397' => 'acertr', 'Atru.chr4.992' => 'acertr', 'AUR62002029' => 'cqu', 'AUR62003769' => 'cqu', 'AUR62027676' => 'cqu', 'AUR62027721' => 'cqu', 'AUR62031205' => 'cqu', 'AUR62038527' => 'cqu', 'BcaB01g02850' => 'bca', 'BcaB03g13904' => 'bca', 'BcaB04g18485' => 'bca', 'BcaB05g25094' => 'bca', 'BcaB07g30426' => 'bca', 'BcaB07g30865' => 'bca', 'BcaB07g32498' => 'bca', 'BcaB08g37136' => 'bca', 'BcaC01g00551' => 'bca', 'BcaC01g04757' => 'bca', 'BcaC03g13294' => 'bca', 'BcaC03g15784' => 'bca', 'BcaC03g16796' => 'bca', 'BcaC04g19335' => 'bca', 'BcaC04g19337' => 'bca', 'BcaC04g21740' => 'bca', 'BcaC05g26930' => 'bca', 'BcaC06g31507' => 'bca', 'BcaC06g34388' => 'bca', 'BcaC06g35401' => 'bca', 'BcaC08g47375' => 'bca', 'BcaC09g51484' => 'bca', 'BcaNung06736' => 'bca', 'BolC1t01229H' => 'bol', 'BolC2t06389H' => 'bol', 'BolC2t09544H' => 'bol', 'BolC2t10721H' => 'bol', 'BolC3t15721H' => 'bol', 'BolC3t19810H' => 'bol', 'BolC3t20401H' => 'bol', 'BolC5t31504H' => 'bol', 'BolC6t40218H' => 'bol', 'BolC7t42153H' => 'bol', 'BolC7t43461H' => 'bol', 'BolC7t45487H' => 'bol', 'BolC9t55689H' => 'bol', 'BolC9t59498H' => 'bol', 'BolC9t59502H' => 'bol', 'BraA01t01008Z' => 'bra', 'BraA02t05018Z' => 'bra', 'BraA02t07197Z' => 'bra', 'BraA02t07969Z' => 'bra', 'BraA03t12030Z' => 'bra', 'BraA03t14227Z' => 'bra', 'BraA06t27491Z' => 'bra', 'BraA07t28882Z' => 'bra', 'BraA07t31848Z' => 'bra', 'BraA08t33374Z' => 'bra', 'BraA08t34482Z' => 'bra', 'BraA09t37807Z' => 'bra', 'BraA09t39235Z' => 'bra', 'BraA10t44791Z' => 'bra', 'C01p12550' => 'bna', 'C02p04260' => 'bna', 'C02p35270' => 'bna', 'C02p46690' => 'bna', 'C03p34120' => 'bna', 'C03p75530' => 'bna', 'C03p81380' => 'bna', 'C05p27830' => 'bna', 'C06p51950' => 'bna', 'C07p16560' => 'bna', 'C07p29180' => 'bna', 'C07p49850' => 'bna', 'C09p28140' => 'bna', 'C09p67330' => 'bna', 'C09p67360' => 'bna', 'C09p67390' => 'bna', 'CAN.G1119.7' => 'can', 'CAN.G1286.3' => 'can', 'CAN.G162.10' => 'can', 'CAN.G280.20' => 'can', 'CAN.G292.1' => 'can', 'CAN.G329.1' => 'can', 'CAN.G344.7' => 'can', 'CAN.G370.72' => 'can', 'CAN.G383.7' => 'can', 'CANSAT01G1648' => 'cansat', 'CANSAT25G2348' => 'cansat', 'CANSAT54G1849' => 'cansat', 'CARHR028450' => 'chi', 'CARHR071490' => 'chi', 'CARHR128220' => 'chi', 'CARHR176080' => 'chi', 'CARHR203160' => 'chi', 'CARHR225450' => 'chi', 'CARHR259670' => 'chi', 'CARHR259680' => 'chi', 'Carub.0001s2734' => 'cru', 'Carub.0002s2492' => 'cru', 'Carub.0006s0859' => 'cru', 'Carub.0006s2719' => 'cru', 'Carub.0007s2263' => 'cru', 'Carub.0008s0207' => 'cru', 'Ca_00434_v3' => 'car', 'Ca_03993_v3' => 'car', 'Ca_15231_v3' => 'car', 'Ca_16540_v3' => 'car', 'Cc02_g14950' => 'ccan', 'Cc05_g03690' => 'ccan', 'Cc05_g03700' => 'ccan', 'Cc05_g11220' => 'ccan', 'Cc07_g15500' => 'ccan', 'CDE02G0486' => 'cde', 'CDE02G2937' => 'cde', 'CDE03G0343' => 'cde', 'CDE06G0280' => 'cde', 'CDE06G1280' => 'cde', 'Cfa000605' => 'cfa', 'Cfa002689' => 'cfa', 'Cfa015920' => 'cfa', 'Cfa019578' => 'cfa', 'Ciclev10002743m.g' => 'ccl', 'Ciclev10017321m.g' => 'ccl', 'Ciclev10024378m.g' => 'ccl', 'Ciclev10027141m.g' => 'ccl', 'Ciclev10027343m.g' => 'ccl', 'CiPaw.03G139900' => 'cil', 'CiPaw.05G234900' => 'cil', 'CiPaw.06G021400' => 'cil', 'CiPaw.09G069600' => 'cil', 'CiPaw.10G058800' => 'cil', 'ClCG01G005440' => 'cla', 'ClCG01G023720' => 'cla', 'ClCG03G007730' => 'cla', 'ClCG03G014880' => 'cla', 'ClCG07G009620' => 'cla', 'ClCG08G010950' => 'cla', 'COL.COLO4_09928' => 'col', 'COL.COLO4_16449' => 'col', 'COL.COLO4_17577' => 'col', 'COL.COLO4_31301' => 'col', 'COL.COLO4_31369' => 'col', 'COL.COLO4_32255' => 'col', 'Cpa.g.sc66.86' => 'cpa', 'Cpa.g.sc7.68' => 'cpa', 'Cpa.g.sc97.99' => 'cpa', 'CsaV3_1G022970' => 'csa', 'CsaV3_1G041280' => 'csa', 'CsaV3_4G004690' => 'csa', 'CsaV3_5G005680' => 'csa', 'CsaV3_6G050870' => 'csa', 'CsaV3_6G050880' => 'csa', 'CsaV3_UNG137040' => 'csa', 'CsaV3_UNG146130' => 'csa', 'CsaV3_UNG218490' => 'csa', 'CSS0002731' => 'camsi', 'CSS0003048' => 'camsi', 'CSS0020376' => 'camsi', 'CSS0022899' => 'camsi', 'CSS0026689' => 'camsi', 'CSS0031343' => 'camsi', 'CSS0031556' => 'camsi', 'CSS0036116' => 'camsi', 'CSS0039098' => 'camsi', 'CSS0041008' => 'camsi', 'DCAR_005220' => 'dca', 'DCAR_005221' => 'dca', 'DCAR_011506' => 'dca', 'DCAR_014241' => 'dca', 'DCAR_028003' => 'dca', 'Dinv13038' => 'din', 'Dinv14982' => 'din', 'Dinv16306' => 'din', 'Dinv18356' => 'din', 'Dinv44749' => 'din', 'Duzib041G0525' => 'dzi', 'Duzib093G0732' => 'dzi', 'Duzib116G0359' => 'dzi', 'Duzib147G0305' => 'dzi', 'Duzib160G0214' => 'dzi', 'Duzib192G0632' => 'dzi', 'Duzib192G0878' => 'dzi', 'Duzib213G0436' => 'dzi', 'Duzib213G0926' => 'dzi', 'Duzib264G0113' => 'dzi', 'Duzib268G0209' => 'dzi', 'ECA246G3022' => 'eca', 'ECA247G2260' => 'eca', 'ECA248G2074' => 'eca', 'EL10Ac1g01262' => 'bvu', 'EL10Ac6g15074' => 'bvu', 'EL10Ac8g20599' => 'bvu', 'Eucgr.E02748' => 'egr', 'Eucgr.F00490' => 'egr', 'Eucgr.F03264' => 'egr', 'Eucgr.H04813' => 'egr', 'FAN04G1858' => 'fan', 'FAN08G2851' => 'fan', 'FAN11G0622' => 'fan', 'FAN11G0770' => 'fan', 'FAN11G3744' => 'fan', 'FAN13G1343' => 'fan', 'FAN16G1525' => 'fan', 'FAN16G2067' => 'fan', 'FAN18G0929' => 'fan', 'FAN19G2863' => 'fan', 'FAN21G0573' => 'fan', 'FAN21G3363' => 'fan', 'FAN23G0030' => 'fan', 'FAN25G1919' => 'fan', 'FAN25G2923' => 'fan', 'FAN25G3496' => 'fan', 'FAN26G0038' => 'fan', 'FAN28G2778' => 'fan', 'FvH4_1g21330' => 'fve', 'FvH4_3g07791' => 'fve', 'FvH4_3g18470' => 'fve', 'FvH4_3g18480' => 'fve', 'FvH4_3g18490' => 'fve', 'FvH4_5g37940' => 'fve', 'Glyma.04G104600' => 'gma', 'Glyma.06G105700' => 'gma', 'Glyma.11G238900' => 'gma', 'Glyma.13G087700' => 'gma', 'Glyma.13G230300' => 'gma', 'Glyma.13G270700' => 'gma', 'Glyma.15G082300' => 'gma', 'Glyma.18G018500' => 'gma', 'Gohir.A01G055900' => 'ghi', 'Gohir.A02G025300' => 'ghi', 'Gohir.A02G075700' => 'ghi', 'Gohir.A04G041300' => 'ghi', 'Gohir.A04G041400' => 'ghi', 'Gohir.A04G041500' => 'ghi', 'Gohir.A04G041600' => 'ghi', 'Gohir.A04G041700' => 'ghi', 'Gohir.A04G041800' => 'ghi', 'Gohir.A05G267800' => 'ghi', 'Gohir.A08G165350' => 'ghi', 'Gohir.A08G234700' => 'ghi', 'Gohir.A12G093400' => 'ghi', 'Gohir.D01G042768' => 'ghi', 'Gohir.D02G032500' => 'ghi', 'Gohir.D02G082800' => 'ghi', 'Gohir.D05G269600' => 'ghi', 'Gohir.D05G341400' => 'ghi', 'Gohir.D05G341500' => 'ghi', 'Gohir.D05G341600' => 'ghi', 'Gohir.D05G341650' => 'ghi', 'Gohir.D05G341700' => 'ghi', 'Gohir.D05G341733' => 'ghi', 'Gohir.D05G341766' => 'ghi', 'Gohir.D05G341800' => 'ghi', 'Gohir.D05G341850' => 'ghi', 'Gohir.D08G255100' => 'ghi', 'Gohir.D12G095500' => 'ghi', 'Gorai.002G061500' => 'gra', 'Gorai.004G272200' => 'gra', 'Gorai.005G093100' => 'gra', 'Gorai.008G104000' => 'gra', 'Gorai.009G282200' => 'gra', 'Gorai.009G368100' => 'gra', 'Gorai.009G368200' => 'gra', 'GSVIVG01006374001' => 'vvi', 'GSVIVG01008996001' => 'vvi', 'GSVIVG01021211001' => 'vvi', 'HanXRQChr01g0005321' => 'han', 'HanXRQChr02g0045021' => 'han', 'HanXRQChr04g0113621' => 'han', 'HanXRQChr11g0320931' => 'han', 'HanXRQChr11g0341531' => 'han', 'HanXRQChr15g0470931' => 'han', 'HanXRQChr15g0470941' => 'han', 'Haze_00575' => 'cav', 'Haze_06232' => 'cav', 'Haze_09338' => 'cav', 'Haze_24961' => 'cav', 'Hma1.2p1_0016F.1_g010760' => 'hma', 'Hma1.2p1_0120F.1_g057140' => 'hma', 'Hma1.2p1_0467F.1_g158610' => 'hma', 'Hma1.2p1_0467F.1_g158620' => 'hma', 'Hma1.2p1_0607F.1_g188070' => 'hma', 'Hma1.2p1_0896F.1_g233860' => 'hma', 'Hma1.2p1_1016F.1_g248170' => 'hma', 'Hma1.2p1_1016F.1_g248175' => 'hma', 'Hma1.2p1_1268F.1_g271570' => 'hma', 'Hma1.2p1_1879F.1_g306340' => 'hma', 'HPP92_000394' => 'vpl', 'HPP92_000785' => 'vpl', 'HPP92_009238' => 'vpl', 'HPP92_026809' => 'vpl', 'HPP92_028191' => 'vpl', 'Hund21176' => 'sun', 'Hund26947' => 'sun', 'Lalb_Chr01g0016611' => 'lal', 'Lalb_Chr07g0186471' => 'lal', 'Lalb_Chr08g0231171' => 'lal', 'Lalb_Chr08g0241891' => 'lal', 'Lalb_Chr10g0095711' => 'lal', 'Lalb_Chr18g0054501' => 'lal', 'Lalb_Chr20g0109311' => 'lal', 'Lalb_Chr20g0117431' => 'lal', 'Lalb_Chr23g0270671' => 'lal', 'Lalb_Chr25g0285911' => 'lal', 'Lj1g0011793' => 'lja', 'Lj1g0026086' => 'lja', 'Lj3g0024497' => 'lja', 'Lj4A107T52' => 'lonja', 'Lj4A882T16' => 'lonja', 'Lj4A884T24' => 'lonja', 'Lj4g0008965' => 'lja', 'Lj6g0028130' => 'lja', 'Lj7A145T40' => 'lonja', 'Lj7A481T56' => 'lonja', 'Lj8A149T51' => 'lonja', 'Lsat_1_v5_gn_1_4180' => 'lsa', 'Lsat_1_v5_gn_5_186660' => 'lsa', 'Lsat_1_v5_gn_5_42161' => 'lsa', 'Lsat_1_v5_gn_8_91860' => 'lsa', 'Lsat_1_v5_gn_9_43580' => 'lsa', 'Manes.02G155000' => 'mes', 'Manes.03G101100' => 'mes', 'Manes.03G102100' => 'mes', 'Manes.12G137300' => 'mes', 'Manes.15G093200' => 'mes', 'Manes.15G095000' => 'mes', 'Manes.18G069700' => 'mes', 'MBI02_g30890_MAGBIO' => 'mbi', 'MBI05_g43460_MAGBIO' => 'mbi', 'MBI05_g45873_MAGBIO' => 'mbi', 'MBI06_g26011_MAGBIO' => 'mbi', 'MBI15_g22715_MAGBIO' => 'mbi', 'MD03G1241700' => 'mdo', 'MD04G1098000' => 'mdo', 'MD05G1301300' => 'mdo', 'MD08G1178700' => 'mdo', 'MD08G1180600' => 'mdo', 'MD10G1148500' => 'mdo', 'MD10G1280200' => 'mdo', 'MD11G1261000' => 'mdo', 'MD13G1213300' => 'mdo', 'MD15G1327700' => 'mdo', 'MD15G1327800' => 'mdo', 'MD15G1364600' => 'mdo', 'Medtr0390s0010' => 'mtr', 'Medtr0390s0040' => 'mtr', 'Medtr0786s0020' => 'mtr', 'Medtr1678s0010' => 'mtr', 'Medtr2g016020' => 'mtr', 'Medtr2g059180' => 'mtr', 'Medtr2g077080' => 'mtr', 'Medtr2g077940' => 'mtr', 'Medtr2g077960' => 'mtr', 'Medtr2g450190' => 'mtr', 'Medtr3g073990' => 'mtr', 'Medtr3g087540' => 'mtr', 'MELO3C005385.2' => 'cme', 'MELO3C007213.2' => 'cme', 'MELO3C011368.2' => 'cme', 'MELO3C015539.2' => 'cme', 'MELO3C017593.2' => 'cme', 'Migut.H01428' => 'egut', 'Migut.H01991' => 'egut', 'Migut.H02381' => 'egut', 'Migut.L00106' => 'egut', 'Migut.M00736' => 'egut', 'MSTRG.14229' => 'ama', 'MSTRG.14729' => 'ama', 'MSTRG.2556' => 'ama', 'MSTRG.3793' => 'ama', 'MSTRG.6674' => 'ama', 'MSTRG.7405' => 'ama', 'Nitab4.5_0000035g0120' => 'nta', 'Nitab4.5_0000201g0270' => 'nta', 'Nitab4.5_0000246g0210' => 'nta', 'Nitab4.5_0000383g0200' => 'nta', 'Nitab4.5_0000605g0230' => 'nta', 'Nitab4.5_0000715g0120' => 'nta', 'Nitab4.5_0002076g0060' => 'nta', 'Nitab4.5_0002252g0060' => 'nta', 'Nitab4.5_0003807g0030' => 'nta', 'Nitab4.5_0004910g0040' => 'nta', 'Nitab4.5_0006225g0040' => 'nta', 'Nitab4.5_0006859g0020' => 'nta', 'Nitab4.5_0007795g0030' => 'nta', 'Nitab4.5_0007975g0040' => 'nta', 'Nitab4.5_0009409g0010' => 'nta', 'Nitab4.5_0010526g0010' => 'nta', 'Nitab4.5_0011534g0010' => 'nta', 'Nn1g05291' => 'nnu', 'Nn1g09106' => 'nnu', 'Nn5g29045' => 'nnu', 'Oeu001084.1' => 'oeu', 'Oeu003910.1' => 'oeu', 'Oeu005380.1' => 'oeu', 'Oeu009529.1' => 'oeu', 'Oeu009530.1' => 'oeu', 'Oeu009532.1' => 'oeu', 'Oeu021669.1' => 'oeu', 'Oeu021671.1' => 'oeu', 'Oeu021672.1' => 'oeu', 'Oeu021674.1' => 'oeu', 'Oeu021676.1' => 'oeu', 'Oeu021678.1' => 'oeu', 'Oeu021680.1' => 'oeu', 'Oeu021683.1' => 'oeu', 'Oeu021684.1' => 'oeu', 'Oeu021685.1' => 'oeu', 'Oeu021686.1' => 'oeu', 'Oeu021687.1' => 'oeu', 'Oeu026723.1' => 'oeu', 'Oeu026724.1' => 'oeu', 'Oeu032165.1' => 'oeu', 'Oeu037957.1' => 'oeu', 'Oeu045785.1' => 'oeu', 'Oeu053563.1' => 'oeu', 'Oeu059264.1' => 'oeu', 'Os04g0398700' => 'osa', 'Os05g0220300' => 'osa', 'Os06g0556600' => 'osa', 'Os07g0590500' => 'osa', 'Os09g0572800' => 'osa', 'Os10g0371000' => 'osa', 'Peaxi162Scf00027g00212' => 'pax', 'Peaxi162Scf00069g02233' => 'pax', 'Peaxi162Scf00069g02234' => 'pax', 'Peaxi162Scf00122g01722' => 'pax', 'Peaxi162Scf00162g00155' => 'pax', 'Peaxi162Scf00200g00101' => 'pax', 'Peaxi162Scf00207g00018' => 'pax', 'Peaxi162Scf00254g00212' => 'pax', 'Peaxi162Scf00295g00059' => 'pax', 'Peaxi162Scf00422g00065' => 'pax', 'Peaxi162Scf00593g00323' => 'pax', 'Peaxi162Scf00778g00313' => 'pax', 'Peaxi162Scf33262g00001' => 'pax', 'PGR004G1710' => 'pgr', 'PGR031G0988' => 'pgr', 'PGR042G0547' => 'pgr', 'PGR042G1028' => 'pgr', 'PGR102G2501' => 'pgr', 'PGR102G3325' => 'pgr', 'PGSC0003DMG400010241' => 'stu', 'PGSC0003DMG400010242' => 'stu', 'PGSC0003DMG400012389' => 'stu', 'PGSC0003DMG400015384' => 'stu', 'PGSC0003DMG400016739' => 'stu', 'PGSC0003DMG400020630' => 'stu', 'PGSC0003DMG400021266' => 'stu', 'PGSC0003DMG400021830' => 'stu', 'PGSC0003DMG401004382' => 'stu', 'Phvul.003G013800' => 'pvu', 'Phvul.003G013900' => 'pvu', 'Phvul.005G066700' => 'pvu', 'Phvul.005G066800' => 'pvu', 'Phvul.006G176500' => 'pvu', 'Phvul.008G171500' => 'pvu', 'Phvul.009G028900' => 'pvu', 'Potri.001G392400' => 'ptr', 'Potri.002G093100' => 'ptr', 'Potri.005G078200' => 'ptr', 'Potri.005G167900' => 'ptr', 'Potri.007G090100' => 'ptr', 'Potri.011G111300' => 'ptr', 'Prupe.1G512400' => 'ppe', 'Prupe.4G061100' => 'ppe', 'Prupe.4G167200' => 'ppe', 'Prupe.5G055800' => 'ppe', 'Prupe.5G056000' => 'ppe', 'Prupe.5G056400' => 'ppe', 'Prupe.5G056600' => 'ppe', 'Prupe.5G056800' => 'ppe', 'Prupe.6G181300' => 'ppe', 'Prupe.7G067400' => 'ppe', 'Psat1g198160' => 'psa', 'Psat5g089320' => 'psa', 'Psat5g136720' => 'psa', 'Psat5g239720' => 'psa', 'PSO063G4941' => 'pso', 'PSO133G0014' => 'pso', 'PSO133G0025' => 'pso', 'PSO133G0031' => 'pso', 'PSO133G0044' => 'pso', 'PSO161G0130' => 'pso', 'PSO210G3874' => 'pso', 'PSO339G2329' => 'pso', 'PSO339G5495' => 'pso', 'PSO384G4690' => 'pso', 'PSO447G0021' => 'pso', 'PSO478G1007' => 'pso', 'PSO500G0313' => 'pso', 'PSO541G0421' => 'pso', 'PSO541G1321' => 'pso', 'PSO541G1400' => 'pso', 'PSO541G3204' => 'pso', 'PSO675G6656' => 'pso', 'PSO782G2470' => 'pso', 'QL05p047069' => 'qlo', 'QL06p036387' => 'qlo', 'QL06p050052' => 'qlo', 'QL12p022153' => 'qlo', 'QL12p036083' => 'qlo', 'RcHm_v2.0_Chr2g0115161' => 'rch', 'RcHm_v2.0_Chr5g0010771' => 'rch', 'RcHm_v2.0_Chr5g0031231' => 'rch', 'RcHm_v2.0_Chr5g0031251' => 'rch', 'RcHm_v2.0_Chr7g0239881' => 'rch', 'Rhsim04G0025300' => 'rsi', 'Rhsim04G0025600' => 'rsi', 'Rhsim04G0025700' => 'rsi', 'Rhsim04G0025900' => 'rsi', 'Rhsim04G0026000' => 'rsi', 'Rhsim06G0207100' => 'rsi', 'Rhsim07G0200800' => 'rsi', 'Rhsim08G0009400' => 'rsi', 'Sabra05G0064200' => 'sbr', 'Sabra05G0126500' => 'sbr', 'Sabra11G0098500' => 'sbr', 'Sabra16G0095200' => 'sbr', 'Sabra16G0257100' => 'sbr', 'Sabra16G0257200' => 'sbr', 'Sabra16G0257300' => 'sbr', 'SalBow3G0356' => 'sbo', 'SalBow5G0972' => 'sbo', 'SalBow5G1442' => 'sbo', 'SalBow7G0300' => 'sbo', 'SalBow7G2785' => 'sbo', 'Sc01g0000100' => 'sci', 'Sc01g0000220' => 'sci', 'Sc03g0002210' => 'sci', 'Sc03g0002220' => 'sci', 'Sc05g0007110' => 'sci', 'Sc17g0005750' => 'sci', 'Sc24g0001260' => 'sci', 'Sed0005349' => 'sed', 'Sed0005484' => 'sed', 'Sed0010701' => 'sed', 'Sed0014452' => 'sed', 'Sed0019538' => 'sed', 'Sed0024043' => 'sed', 'Sed0025929' => 'sed', 'Sed0026604' => 'sed', 'SEGI_21121' => 'sgi', 'SGA_v2.0_scaffold109G31076' => 'sas', 'SGA_v2.0_scaffold111G31530' => 'sas', 'SGA_v2.0_scaffold130G34297' => 'sas', 'SGA_v2.0_scaffold34G13779' => 'sas', 'SGA_v2.0_scaffold47G17756' => 'sas', 'SGA_v2.0_scaffold47G17796' => 'sas', 'SGA_v2.0_scaffold55G19702' => 'sas', 'SHI21386' => 'shi', 'SHI50403' => 'shi', 'SHI50404' => 'shi', 'Solyc02g076860.3' => 'sly', 'Solyc03g006170.4' => 'sly', 'Solyc04g054810.3' => 'sly', 'Solyc05g051870.3' => 'sly', 'Solyc07g062560.3' => 'sly', 'Solyc10g007270.4' => 'sly', 'Solyc12g014240.3' => 'sly', 'Sopen02g021760' => 'spe', 'Sopen03g002180' => 'spe', 'Sopen04g024610' => 'spe', 'Sopen05g030390' => 'spe', 'Sopen07g030790' => 'spe', 'Sopen10g003090' => 'spe', 'Sopen12g006030' => 'spe', 'Sp1g25070' => 'spa', 'Sp2g10800' => 'spa', 'Sp5g33170' => 'spa', 'Sp6g09100' => 'spa', 'Sp6g33270' => 'spa', 'Sp7g15430' => 'spa', 'TAR365G0079' => 'tar', 'TAR376G0515' => 'tar', 'TAR381G0529' => 'tar', 'TAR625G0836' => 'tar', 'TAR626G0356' => 'tar', 'TAR627G0866' => 'tar', 'TAR628G0008' => 'tar', 'THA.LOC104798425' => 'tha', 'THA.LOC104800161' => 'tha', 'THA.LOC104804732' => 'tha', 'THA.LOC104806154' => 'tha', 'THA.LOC104810890' => 'tha', 'THA.LOC104812637' => 'tha', 'THA.LOC104813125' => 'tha', 'THA.LOC104814254' => 'tha', 'THA.LOC104819304' => 'tha', 'THA.LOC104820592' => 'tha', 'Thecc.01G105000' => 'tca', 'Thecc.06G171000' => 'tca', 'Thecc.07G109800' => 'tca', 'Thecc.08G111000' => 'tca', 'Thhalv10001051m.g' => 'esa', 'Thhalv10008921m.g' => 'esa', 'Thhalv10014875m.g' => 'esa', 'Thhalv10019236m.g' => 'esa', 'Thhalv10026398m.g' => 'esa', 'Thhalv10029031m.g' => 'esa', 'TPR.G11675' => 'tpr', 'TPR.G11763' => 'tpr', 'TPR.G1527' => 'tpr', 'TPR.G40795' => 'tpr', 'TWI12G0640' => 'twi', 'TWI38G0541' => 'twi', 'TWI56G0155' => 'twi', 'TWI60G0890' => 'twi', 'TWI63G0785' => 'twi', 'TWI77G0211' => 'twi', 'TWI81G0984' => 'twi', 'unitig_21.g20062' => 'ugi', 'unitig_26.g9350' => 'ugi', 'unitig_32.g10694' => 'ugi', 'unitig_749.g13663' => 'ugi', 'vmacro04761' => 'vma', 'vmacro18610' => 'vma', 'VMungo0540G1929' => 'vmu', 'VMungo0540G2369' => 'vmu', 'VMungo0647G2263' => 'vmu', 'VMungo1080G0250' => 'vmu', 'VMungo1309G0282' => 'vmu', 'VMungo1383G0653' => 'vmu', 'Zm00001eb027760' => 'zma', 'Zm00001eb084740' => 'zma', 'Zm00001eb284900' => 'zma', 'Zm00001eb339180' => 'zma', 'Zm00001eb350470' => 'zma', 'Zm00001eb421470' => 'zma' ) $gf_id = 'HOM05D000859' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000859' ) $data_identifier = 'HOM05D000859' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 6, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 14, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 11, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 8, 'ghi' => (int) 28, 'gra' => (int) 7, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 4, 'hma' => (int) 10, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 6, 'lsa' => (int) 5, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 12, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 25, 'osa' => (int) 6, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 19, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 1, 'sas' => (int) 7, 'shi' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1